HL_8QOI_110

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8QOI|1|S2|C|1419, 8QOI|1|S2|G|1420, 8QOI|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_110 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.3371

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8QOI|1|S2|C|1416
8QOI|1|S2|C|1417
8QOI|1|S2|C|1418
8QOI|1|S2|C|1419
8QOI|1|S2|G|1420
8QOI|1|S2|A|1421
8QOI|1|S2|G|1422
8QOI|1|S2|C|1423
8QOI|1|S2|G|1424

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

Small ribosomal subunit protein eS19