HL_8QOI_113

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8QOI|1|S2|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|G|1613
8QOI|1|S2|A|1614
8QOI|1|S2|U|1615
8QOI|1|S2|U|1616
8QOI|1|S2|G|1617
8QOI|1|S2|C|1618
8QOI|1|S2|A|1619
8QOI|1|S2|A|1620
8QOI|1|S2|U|1621
8QOI|1|S2|U|1622
8QOI|1|S2|A|1623
8QOI|1|S2|U|1624
8QOI|1|S2|PSU|1625
8QOI|1|S2|C|1626

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

Small ribosomal subunit protein eS19

Chain Sd

40S ribosomal protein S29