HL_8QOI_115

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGGGUGCCCCCACGGC*C

Length

17 nucleotides

Bulged bases

8QOI|1|S2|C|1765, 8QOI|1|S2|C|1766, 8QOI|1|S2|C|1767, 8QOI|1|S2|A|1768, 8QOI|1|S2|C|1769, 8QOI|1|S2|G|1770, 8QOI|1|S2|G|1771, 8QOI|1|S2|C|1772

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|G|1757
8QOI|1|S2|G|1758
8QOI|1|S2|G|1759
8QOI|1|S2|G|1760
8QOI|1|S2|U|1761
8QOI|1|S2|G|1771
8QOI|1|S2|C|1772
8QOI|1|S2|C|1773
8QOI|1|S2|C|1765
8QOI|1|S2|C|1766
8QOI|1|S2|C|1767
8QOI|1|S2|A|1768
8QOI|1|S2|C|1769
8QOI|1|S2|G|1770
8QOI|1|S2|G|1771
8QOI|1|S2|C|1772
*
8QOI|1|S2|C|1773

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains