HL_8QOI_116
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GUG(MA6)(MA6)C
- Length
- 6 nucleotides
- Bulged bases
- 8QOI|1|S2|G|1849
- QA status
- Modified nucleotides: MA6
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_116 not in the Motif Atlas
- Homologous match to HL_8C3A_227
- Geometric discrepancy: 0.0824
- The information below is about HL_8C3A_227
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
8QOI|1|S2|G|1847
8QOI|1|S2|U|1848
8QOI|1|S2|G|1849
8QOI|1|S2|MA6|1850
8QOI|1|S2|MA6|1851
8QOI|1|S2|C|1852
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
Coloring options: