HL_8QPK_002
3D structure
- PDB id
- 8QPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Pre-B+5'ss Complex (core part)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCGCCUUUUACUA
- Length
- 13 nucleotides
- Bulged bases
- 8QPK|1|5|C|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QPK|1|5|U|35
8QPK|1|5|C|36
8QPK|1|5|G|37
8QPK|1|5|C|38
8QPK|1|5|C|39
8QPK|1|5|U|40
8QPK|1|5|U|41
8QPK|1|5|U|42
8QPK|1|5|U|43
8QPK|1|5|A|44
8QPK|1|5|C|45
8QPK|1|5|U|46
8QPK|1|5|A|47
Current chains
- Chain 5
- U5 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Thioredoxin-like protein 4A
- Chain G
- Probable ATP-dependent RNA helicase DDX23
- Chain z
- 5'ss oligo
Coloring options: