HL_8QPP_018

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUUCCGC

Length

8 nucleotides

Bulged bases

8QPP|1|A|U|852

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3231

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8QPP|1|A|G|849
8QPP|1|A|U|850
8QPP|1|A|U|851
8QPP|1|A|U|852
8QPP|1|A|C|853
8QPP|1|A|C|854
8QPP|1|A|G|855
8QPP|1|A|C|856

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain R

30S ribosomal protein S18