HL_8QPP_069

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8QPP|1|X|C|1364, 8QPP|1|X|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_069 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.134

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8QPP|1|X|G|1363
8QPP|1|X|C|1364
8QPP|1|X|U|1365
8QPP|1|X|C|1366
8QPP|1|X|G|1367
8QPP|1|X|U|1368
8QPP|1|X|C|1369

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22