HL_8QPP_086

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8QPP|1|X|A|2059, 8QPP|1|X|A|2060, 8QPP|1|X|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_086 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1309

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8QPP|1|X|G|2056
8QPP|1|X|U|2057
8QPP|1|X|G|2058
8QPP|1|X|A|2059
8QPP|1|X|A|2060
8QPP|1|X|G|2061
8QPP|1|X|A|2062
8QPP|1|X|U|2063
8QPP|1|X|G|2064
8QPP|1|X|C|2065

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain a

Large ribosomal subunit protein uL3

Chain o

Large ribosomal subunit protein bL21