HL_8QPP_092

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_092 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1703

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8QPP|1|X|U|2353
8QPP|1|X|G|2354
8QPP|1|X|U|2355
8QPP|1|X|A|2356
8QPP|1|X|A|2357
8QPP|1|X|A|2358
8QPP|1|X|G|2359
8QPP|1|X|G|2360

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain U

Transfer RNA; tRNA

Chain j

Large ribosomal subunit protein uL16

Chain u

Large ribosomal subunit protein bL27