HL_8QRN_011

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRN_011 not in the Motif Atlas

Geometric match to HL_4V9F_040

Geometric discrepancy: 0.2448

The information below is about HL_4V9F_040

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8QRN|1|A|C|894
8QRN|1|A|C|895
8QRN|1|A|A|896
8QRN|1|A|C|897
8QRN|1|A|C|898
8QRN|1|A|G|899

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain J

28S ribosomal protein S12, mitochondrial

Chain O

28S ribosomal protein S18b, mitochondrial