HL_8QSJ_031

3D structure

PDB id

8QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

8QSJ|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QSJ_031 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1398

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QSJ|1|A|U|3015
8QSJ|1|A|G|3016
8QSJ|1|A|C|3017
8QSJ|1|A|A|3018
8QSJ|1|A|G|3019
8QSJ|1|A|C|3020
8QSJ|1|A|C|3021
8QSJ|1|A|G|3022

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial