HL_8QXD_002

3D structure

PDB id

8QXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the cross-exon pre-B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

8QXD|1|2|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QXD|1|2|G|158
8QXD|1|2|U|159
8QXD|1|2|A|160
8QXD|1|2|U|161
8QXD|1|2|U|162
8QXD|1|2|G|163
8QXD|1|2|C|164
8QXD|1|2|A|165
8QXD|1|2|G|166
8QXD|1|2|U|167
8QXD|1|2|A|168
8QXD|1|2|C|169
8QXD|1|2|C|170
8QXD|1|2|U|171
8QXD|1|2|C|172

Current chains

Chain 2

U2 snRNA

Nearby chains

Chain 23

Small nuclear ribonucleoprotein Sm D3

Chain 2B

U2 small nuclear ribonucleoprotein B''