HL_8R08_003

3D structure

PDB id

8R08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the cross-exon pre-B+AMPPNP complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCAAAUGUG

Length

9 nucleotides

Bulged bases

8R08|1|1|U|105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R08|1|1|C|100
8R08|1|1|C|101
8R08|1|1|A|102
8R08|1|1|A|103
8R08|1|1|A|104
8R08|1|1|U|105
8R08|1|1|G|106
8R08|1|1|U|107
8R08|1|1|G|108

Current chains

Chain 1

U1 snRNA

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain X

U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein