HL_8R6C_012

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8R6C|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2071

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8R6C|1|A|G|462
8R6C|1|A|U|463
8R6C|1|A|U|464
8R6C|1|A|A|465
8R6C|1|A|A|466
8R6C|1|A|U|467
8R6C|1|A|A|468
8R6C|1|A|C|469
8R6C|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains