HL_8R6C_033
3D structure
- PDB id
- 8R6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACUCAUAU*U
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8R6C_033 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1495
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8R6C|1|Y|A|31
8R6C|1|Y|C|32
8R6C|1|Y|U|33
8R6C|1|Y|C|34
8R6C|1|Y|A|35
8R6C|1|Y|U|36
8R6C|1|Y|A|38
8R6C|1|Y|U|39
*
8R6C|1|Y|U|39
Current chains
- Chain Y
- Isoeucine-tRNA
Nearby chains
- Chain 6
- Paenilamicin B2
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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