HL_8R6C_035

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAAGGGAC

Length

9 nucleotides

Bulged bases

8R6C|1|Z|G|18, 8R6C|1|Z|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_035 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.4913

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

8R6C|1|Z|G|12
8R6C|1|Z|A|13
8R6C|1|Z|A|14
8R6C|1|Z|A|15
8R6C|1|Z|G|18
8R6C|1|Z|G|19
8R6C|1|Z|G|22
8R6C|1|Z|A|23
8R6C|1|Z|C|24

Current chains

Chain Z

Leucine-tRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5