HL_8R6C_045

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_045 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0444

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8R6C|1|a|C|246
8R6C|1|a|G|247
8R6C|1|a|G|248
8R6C|1|a|C|249
8R6C|1|a|G|250
8R6C|1|a|A|251
8R6C|1|a|G|252

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain 5

Transfer RNA; tRNA

Chain k

50S ribosomal protein L15