HL_8R6C_050

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8R6C|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_050 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0515

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8R6C|1|a|G|410
8R6C|1|a|G|411
8R6C|1|a|A|412
8R6C|1|a|C|413
8R6C|1|a|C|414
8R6C|1|a|A|415
8R6C|1|a|U|416
8R6C|1|a|C|417

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15