HL_8R6C_064

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_064 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.06

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8R6C|1|a|G|978
8R6C|1|a|A|979
8R6C|1|a|A|980
8R6C|1|a|A|981
8R6C|1|a|C|982
8R6C|1|a|A|983
8R6C|1|a|A|984
8R6C|1|a|C|985

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain y

Large ribosomal subunit protein uL30