HL_8R6C_067

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8R6C|1|a|U|1325, 8R6C|1|a|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_067 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.0709

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8R6C|1|a|G|1324
8R6C|1|a|U|1325
8R6C|1|a|U|1326
8R6C|1|a|A|1327
8R6C|1|a|A|1328
8R6C|1|a|U|1329
8R6C|1|a|C|1330

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22