HL_8R8M_013

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_013 not in the Motif Atlas

Homologous match to HL_5J7L_013

Geometric discrepancy: 0.0745

The information below is about HL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R8M|1|A|G|521
8R8M|1|A|C|522
8R8M|1|A|A|523
8R8M|1|A|G|524
8R8M|1|A|C|525
8R8M|1|A|C|526
8R8M|1|A|G7M|527
8R8M|1|A|C|528

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain X

mRNA