HL_8R8M_021

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_021 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2604

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8R8M|1|A|A|1012
8R8M|1|A|G|1013
8R8M|1|A|A|1014
8R8M|1|A|G|1015
8R8M|1|A|A|1016
8R8M|1|A|U|1017

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19