HL_8R8M_031

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

G(2MG)GAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_031 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1053

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8R8M|1|A|G|1515
8R8M|1|A|2MG|1516
8R8M|1|A|G|1517
8R8M|1|A|A|1518
8R8M|1|A|A|1519
8R8M|1|A|C|1520

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA