3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAGGGAG
Length
7 nucleotides
Bulged bases
8R8M|1|Y|G|17, 8R8M|1|Y|G|18
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8R8M_032 not in the Motif Atlas
Homologous match to HL_3KFU_004
Geometric discrepancy: 0.1041
The information below is about HL_3KFU_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8R8M|1|Y|C|13
8R8M|1|Y|A|14
8R8M|1|Y|G|15
8R8M|1|Y|G|17
8R8M|1|Y|G|18
8R8M|1|Y|A|21
8R8M|1|Y|G|22

Current chains

Chain Y
Isoleucine-tRNA

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain f
Large ribosomal subunit protein uL5

Coloring options:


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