HL_8R8M_043

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8R8M|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_043 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0506

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8R8M|1|a|G|194
8R8M|1|a|A|195
8R8M|1|a|A|196
8R8M|1|a|A|197
8R8M|1|a|C|198
8R8M|1|a|A|199
8R8M|1|a|U|200
8R8M|1|a|C|201

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28