HL_8R8M_069

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8R8M|1|a|U|1396, 8R8M|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_069 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0577

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8R8M|1|a|G|1389
8R8M|1|a|U|1390
8R8M|1|a|U|1391
8R8M|1|a|A|1392
8R8M|1|a|A|1393
8R8M|1|a|U|1394
8R8M|1|a|A|1395
8R8M|1|a|U|1396
8R8M|1|a|U|1397
8R8M|1|a|C|1398

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23