HL_8R8M_086

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8R8M|1|a|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_086 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0774

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8R8M|1|a|C|2248
8R8M|1|a|U|2249
8R8M|1|a|G|2250
8R8M|1|a|OMG|2251
8R8M|1|a|G|2252
8R8M|1|a|G|2253
8R8M|1|a|C|2254
8R8M|1|a|G|2255
8R8M|1|a|G|2256

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27