HL_8R8M_101

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8R8M|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_101 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0539

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8R8M|1|a|G|2819
8R8M|1|a|A|2820
8R8M|1|a|A|2821
8R8M|1|a|G|2822
8R8M|1|a|A|2823
8R8M|1|a|C|2824
8R8M|1|a|G|2825
8R8M|1|a|A|2826
8R8M|1|a|C|2827

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17