HL_8RCL_139
3D structure
- PDB id
- 8RCL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Non-rotated disome interface class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- G(5MU)(PSU)CGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RCL_139 not in the Motif Atlas
- Homologous match to HL_1SER_002
- Geometric discrepancy: 0.1744
- The information below is about HL_1SER_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8RCL|1|W|G|53
8RCL|1|W|5MU|54
8RCL|1|W|PSU|55
8RCL|1|W|C|56
8RCL|1|W|G|57
8RCL|1|W|A|58
8RCL|1|W|G|59
8RCL|1|W|U|60
8RCL|1|W|C|61
Current chains
- Chain W
- tRNA-Trp (P-site)
Nearby chains
- Chain 72
- Large subunit ribosomal RNA; LSU rRNA
- Chain e2
- 50S ribosomal protein L5
- Chain h2
- 50S ribosomal protein L16
Coloring options: