HL_8RCL_142

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAGC(H2U)GGA(H2U)AG

Length

11 nucleotides

Bulged bases

8RCL|1|X2|G|18, 8RCL|1|X2|G|19, 8RCL|1|X2|A|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCL_142 not in the Motif Atlas

Homologous match to HL_3AMU_001

Geometric discrepancy: 0.3619

The information below is about HL_3AMU_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_76842.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8RCL|1|X2|C|13
8RCL|1|X2|A|14
8RCL|1|X2|G|15
8RCL|1|X2|C|16
8RCL|1|X2|H2U|17
8RCL|1|X2|G|18
8RCL|1|X2|G|19
8RCL|1|X2|A|20
8RCL|1|X2|H2U|21
8RCL|1|X2|A|22
8RCL|1|X2|G|23

Current chains

Chain X2

tRNA-Arg (E-site)

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain a2

Large ribosomal subunit protein uL1