HL_8RCL_145

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCL_145 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1792

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8RCL|1|Y1|C|13
8RCL|1|Y1|A|14
8RCL|1|Y1|G|15
8RCL|1|Y1|A|21
8RCL|1|Y1|G|22

Current chains

Chain Y1

tRNA-Val (A-site)

Nearby chains

Chain 71

Large subunit ribosomal RNA; LSU rRNA