HL_8RCL_147
3D structure
- PDB id
- 8RCL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Non-rotated disome interface class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAGC(H2U)GGGAG
- Length
- 10 nucleotides
- Bulged bases
- 8RCL|1|Y2|C|16, 8RCL|1|Y2|G|18, 8RCL|1|Y2|G|19, 8RCL|1|Y2|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RCL_147 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1527
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8RCL|1|Y2|C|13
8RCL|1|Y2|A|14
8RCL|1|Y2|G|15
8RCL|1|Y2|C|16
8RCL|1|Y2|H2U|17
8RCL|1|Y2|G|18
8RCL|1|Y2|G|19
8RCL|1|Y2|G|20
8RCL|1|Y2|A|21
8RCL|1|Y2|G|22
Current chains
- Chain Y2
- tRNA-Ala (A-site)
Nearby chains
- Chain 72
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- Transfer RNA; tRNA
Coloring options: