3D structure

PDB id
8RCL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli paused disome complex (Non-rotated disome interface class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.49 Å

Loop

Sequence
CAGC(H2U)GGGAG
Length
10 nucleotides
Bulged bases
8RCL|1|Y2|C|16, 8RCL|1|Y2|G|18, 8RCL|1|Y2|G|19, 8RCL|1|Y2|G|20
QA status
Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RCL_147 not in the Motif Atlas
Homologous match to HL_1QF6_001
Geometric discrepancy: 0.1527
The information below is about HL_1QF6_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

8RCL|1|Y2|C|13
8RCL|1|Y2|A|14
8RCL|1|Y2|G|15
8RCL|1|Y2|C|16
8RCL|1|Y2|H2U|17
8RCL|1|Y2|G|18
8RCL|1|Y2|G|19
8RCL|1|Y2|G|20
8RCL|1|Y2|A|21
8RCL|1|Y2|G|22

Current chains

Chain Y2
tRNA-Ala (A-site)

Nearby chains

Chain 72
Large subunit ribosomal RNA; LSU rRNA
Chain W
Transfer RNA; tRNA

Coloring options:


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