HL_8RCL_149
3D structure
- PDB id
- 8RCL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Non-rotated disome interface class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RCL_149 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.1706
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8RCL|1|Y2|G|53
8RCL|1|Y2|5MU|54
8RCL|1|Y2|PSU|55
8RCL|1|Y2|C|56
8RCL|1|Y2|G|57
8RCL|1|Y2|A|58
8RCL|1|Y2|U|59
8RCL|1|Y2|C|60
8RCL|1|Y2|C|61
Current chains
- Chain Y2
- tRNA-Ala (A-site)
Nearby chains
- Chain 72
- Large subunit ribosomal RNA; LSU rRNA
- Chain h2
- 50S ribosomal protein L16
Coloring options: