HL_8RCM_133

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCM_133 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1234

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RCM|1|A2|C|1314
8RCM|1|A2|U|1315
8RCM|1|A2|G|1316
8RCM|1|A2|C|1317
8RCM|1|A2|A|1318
8RCM|1|A2|A|1319
8RCM|1|A2|C|1320
8RCM|1|A2|U|1321
8RCM|1|A2|C|1322
8RCM|1|A2|G|1323

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain M2

Small ribosomal subunit protein uS13

Chain N2

Small ribosomal subunit protein uS14

Chain S2

Small ribosomal subunit protein uS19