HL_8RCS_139

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

G(5MU)(PSU)CGAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCS_139 not in the Motif Atlas

Homologous match to HL_1FIR_003

Geometric discrepancy: 0.3047

The information below is about HL_1FIR_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8RCS|1|W|G|53
8RCS|1|W|5MU|54
8RCS|1|W|PSU|55
8RCS|1|W|C|56
8RCS|1|W|G|57
8RCS|1|W|A|58
8RCS|1|W|G|59
8RCS|1|W|U|60
8RCS|1|W|C|61

Current chains

Chain W

tRNA-Trp (P/E-site)

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain a2

Large ribosomal subunit protein uL1