HL_8RCS_143

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CAUGGCAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCS_143 not in the Motif Atlas

Homologous match to HL_6UFG_007

Geometric discrepancy: 0.1617

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

8RCS|1|Y|C|31
8RCS|1|Y|A|32
8RCS|1|Y|U|33
8RCS|1|Y|G|34
8RCS|1|Y|G|35
8RCS|1|Y|C|36
8RCS|1|Y|A|37
8RCS|1|Y|U|38
8RCS|1|Y|G|39

Current chains

Chain Y

tRNA-Ala (A/P-site)

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain V2

messenger RNA