3D structure

PDB id
8RCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli paused disome complex (Rotated disome interface class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.32 Å

Loop

Sequence
CAUGGCAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RCT_143 not in the Motif Atlas
Homologous match to HL_6UFG_007
Geometric discrepancy: 0.1704
The information below is about HL_6UFG_007
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.6
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

8RCT|1|Y|C|31
8RCT|1|Y|A|32
8RCT|1|Y|U|33
8RCT|1|Y|G|34
8RCT|1|Y|G|35
8RCT|1|Y|C|36
8RCT|1|Y|A|37
8RCT|1|Y|U|38
8RCT|1|Y|G|39

Current chains

Chain Y
tRNA-Ala (A/P-site)

Nearby chains

Chain 72
Large subunit ribosomal RNA; LSU rRNA
Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain V2
messenger RNA

Coloring options:


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