HL_8RD8_002
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUUCGA
- Length
- 6 nucleotides
- Bulged bases
- 8RD8|1|D8|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_002 not in the Motif Atlas
- Geometric match to HL_4PDB_001
- Geometric discrepancy: 0.0843
- The information below is about HL_4PDB_001
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.4
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 63
Unit IDs
8RD8|1|D8|U|83
8RD8|1|D8|U|84
8RD8|1|D8|U|85
8RD8|1|D8|C|86
8RD8|1|D8|G|87
8RD8|1|D8|A|88
Current chains
- Chain D8
- 5S rRNA
Nearby chains
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain UC
- Large ribosomal subunit protein bL25
- Chain YW
- Large ribosomal subunit protein uL30
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
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