HL_8RD8_023

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_023 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1848

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8RD8|1|Z2|C|697
8RD8|1|Z2|G|698
8RD8|1|Z2|U|699
8RD8|1|Z2|A|700
8RD8|1|Z2|A|701
8RD8|1|Z2|C|702
8RD8|1|Z2|A|703
8RD8|1|Z2|G|704

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain OL

Small ribosomal subunit protein uS15