HL_8RD8_024
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 8RD8|1|Z2|U|732, 8RD8|1|Z2|A|736, 8RD8|1|Z2|A|737
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_024 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1198
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
8RD8|1|Z2|C|729
8RD8|1|Z2|G|730
8RD8|1|Z2|U|731
8RD8|1|Z2|U|732
8RD8|1|Z2|G|733
8RD8|1|Z2|A|734
8RD8|1|Z2|A|735
8RD8|1|Z2|A|736
8RD8|1|Z2|A|737
8RD8|1|Z2|G|738
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
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