HL_8RD8_025

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8RD8|1|Z2|A|766, 8RD8|1|Z2|G|769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_025 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0415

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8RD8|1|Z2|U|764
8RD8|1|Z2|G|765
8RD8|1|Z2|A|766
8RD8|1|Z2|A|767
8RD8|1|Z2|A|768
8RD8|1|Z2|G|769
8RD8|1|Z2|G|770

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2