HL_8RD8_039

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8RD8|1|Z2|C|1477, 8RD8|1|Z2|U|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_039 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1128

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8RD8|1|Z2|G|1476
8RD8|1|Z2|C|1477
8RD8|1|Z2|A|1478
8RD8|1|Z2|A|1479
8RD8|1|Z2|A|1480
8RD8|1|Z2|U|1481
8RD8|1|Z2|C|1482

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2