HL_8RD8_044

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8RD8|1|Z2|U|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_044 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0679

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

8RD8|1|Z2|C|1679
8RD8|1|Z2|U|1680
8RD8|1|Z2|U|1681
8RD8|1|Z2|C|1682
8RD8|1|Z2|G|1683
8RD8|1|Z2|G|1684

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain iN

Small subunit ribosomal RNA; SSU rRNA