HL_8RD8_055

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8RD8|1|Z2|G|2233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_055 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0878

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RD8|1|Z2|C|2231
8RD8|1|Z2|U|2232
8RD8|1|Z2|G|2233
8RD8|1|Z2|G|2234
8RD8|1|Z2|G|2235
8RD8|1|Z2|G|2236
8RD8|1|Z2|C|2237
8RD8|1|Z2|G|2238
8RD8|1|Z2|G|2239

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain Lg

Large ribosomal subunit protein uL16

Chain VH

Large ribosomal subunit protein bL27