HL_8RD8_057
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GGUCGGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_057 not in the Motif Atlas
- Homologous match to HL_7RQB_055
- Geometric discrepancy: 0.1194
- The information below is about HL_7RQB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RD8|1|Z2|G|2286
8RD8|1|Z2|G|2287
8RD8|1|Z2|U|2288
8RD8|1|Z2|C|2289
8RD8|1|Z2|G|2290
8RD8|1|Z2|G|2291
8RD8|1|Z2|A|2292
8RD8|1|Z2|A|2293
8RD8|1|Z2|A|2294
8RD8|1|Z2|U|2295
8RD8|1|Z2|C|2296
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain D8
- 5S ribosomal RNA; 5S rRNA
- Chain F7
- Large ribosomal subunit protein uL5
Coloring options: