HL_8RD8_062
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_062 not in the Motif Atlas
- Homologous match to HL_7RQB_060
- Geometric discrepancy: 0.1259
- The information below is about HL_7RQB_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06192.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 14
Unit IDs
8RD8|1|Z2|A|2454
8RD8|1|Z2|G|2455
8RD8|1|Z2|U|2456
8RD8|1|Z2|U|2457
8RD8|1|Z2|C|2458
8RD8|1|Z2|A|2459
8RD8|1|Z2|U|2460
8RD8|1|Z2|A|2461
8RD8|1|Z2|U|2462
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain GR
- Large ribosomal subunit protein uL6
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain ep
- Large ribosomal subunit protein bL36
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