HL_8RD8_067

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_067 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.1117

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8RD8|1|Z2|C|2684
8RD8|1|Z2|G|2685
8RD8|1|Z2|C|2686
8RD8|1|Z2|C|2687
8RD8|1|Z2|A|2688
8RD8|1|Z2|G|2689

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain MB

Large ribosomal subunit protein bL17