HL_8RD8_081

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8RD8|1|iN|U|510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1306

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8RD8|1|iN|G|505
8RD8|1|iN|U|506
8RD8|1|iN|U|507
8RD8|1|iN|A|508
8RD8|1|iN|A|509
8RD8|1|iN|U|510
8RD8|1|iN|A|511
8RD8|1|iN|C|512
8RD8|1|iN|C|513

Current chains

Chain iN

16S rRNA

Nearby chains