HL_8RD8_095

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

8RD8|1|iN|C|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_095 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2478

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8RD8|1|iN|U|1210
8RD8|1|iN|G|1211
8RD8|1|iN|A|1212
8RD8|1|iN|C|1213
8RD8|1|iN|A|1214
8RD8|1|iN|A|1215
8RD8|1|iN|A|1216

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2