HL_8RD8_097

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_097 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0885

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RD8|1|iN|C|1359
8RD8|1|iN|U|1360
8RD8|1|iN|G|1361
8RD8|1|iN|C|1362
8RD8|1|iN|A|1363
8RD8|1|iN|A|1364
8RD8|1|iN|C|1365
8RD8|1|iN|U|1366
8RD8|1|iN|C|1367
8RD8|1|iN|G|1368

Current chains

Chain iN

16S rRNA

Nearby chains

Chain HK

Small ribosomal subunit protein uS14

Chain MM

Small ribosomal subunit protein uS13

Chain SP

Small ribosomal subunit protein uS19